PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G265500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 274aa    MW: 30454.9 Da    PI: 7.7249
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G265500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B394.95.4e-3036139196
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+k ltpsdv+k++rlv+pk++ae++      ++++e++  l++ede g+ W+++++y+ +s++yvltkGW+++vk+++L +gD+v F+++
  Brast05G265500.1.p  36 FEKPLTPSDVGKLNRLVIPKQHAERYfplnggDSPTEKDLLLSFEDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKHLAAGDVVHFERV 126
                         99****************************98888889999************************************************88 PP

                         SS..SEE..EEEE CS
                  B3  86 gr..sefelvvkv 96 
                         +   ++ +l+++ 
  Brast05G265500.1.p 127 RGlgTGDRLFIGC 139
                         6553444444444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-3930146IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.03E-2833129IPR015300DNA-binding pseudobarrel domain
CDDcd100172.56E-2834128No hitNo description
PfamPF023623.4E-2736141IPR003340B3 DNA binding domain
SMARTSM010196.3E-2336142IPR003340B3 DNA binding domain
PROSITE profilePS5086313.36636142IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MAMHPLSQGH PQAWPWGVAM YTNLHYHQQY EREHLFEKPL TPSDVGKLNR LVIPKQHAER  60
YFPLNGGDSP TEKDLLLSFE DEAGKPWRFR YSYWTSSQSY VLTKGWSRYV KEKHLAAGDV  120
VHFERVRGLG TGDRLFIGCR SRGESAPAAV APPPPVRVLP PALNAGEQQP WSPMCYSTSG  180
SYPTSPANSY AYRRSVEQDH SDMLHAGESQ RDTDAKSSST ASAPPSRRLR LFGVNLDCGP  240
EPEAEAPTTP MYGYTNHSPY AAVATVPNYW GSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-433315211127DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578891.10.0PREDICTED: B3 domain-containing protein Os11g0156000-like
SwissprotQ53QI01e-131Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLI1IU870.0I1IU87_BRADI; Uncharacterized protein
STRINGBRADI4G42167.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.23e-53B3 family protein